Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099820
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 831
[wgsID] => 514
[fwdFile] => V_35415_R1.fastq.gz
[fwdMd5] => 79f4c044ce533b43bff273e5e0ef0d42
[revFile] => V_35415_R2.fastq.gz
[revMd5] => ecfb9dfa610538605b2f183908bbe24b
[rawReads] => 1063323428
[FastqRCS] => 1
[enaExperiment] => ERX13611301
[enaRun] => ERR14209081
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1740
[wgsID] => 514
[refGenome] => cf4
[dateSubmitted] => 2025-01-08 10:10:31
[dateCompleted] => 2025-01-09 19:57:59
[bamMd5] => f398100fa967a1dffbfa9755077612ab
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 577586570
[primaryReads] => 569911557
[mappedReads] => 576104603
[primaryMapped] => 568429590
[pairedReads] => 557997104
[meanInsertSize] => 324.06
[meanReadDepth] => 22.76
[variantsCalled] => 6136838
[variantsFiltered] => 5898024
[snpCount] => 4204111
[snpHom] => 1795669
[snpHet] => 2408442
[indelCount] => 1702165
[insHom] => 319548
[delHom] => 436790
[insHet] => 439182
[delHet] => 539022
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759342
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759342/V_35415-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242