Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099822
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 833
                    [wgsID] => 516
                    [fwdFile] => V_37160_R1.fastq.gz
                    [fwdMd5] => 18b1ae54a97a960a7f2d005e0abf5b80
                    [revFile] => V_37160_R2.fastq.gz
                    [revMd5] => 122aa8331ba420ad8383bc27c53bdb9f
                    [rawReads] => 1037472408
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611302
                    [enaRun] => ERR14209082
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1741
                    [wgsID] => 516
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-08 10:10:53
                    [dateCompleted] => 2025-01-09 20:21:01
                    [bamMd5] => 1fc0046ef2e305cb01c603052a18d866
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 691905760
                    [primaryReads] => 681661050
                    [mappedReads] => 690573161
                    [primaryMapped] => 680328451
                    [pairedReads] => 667728152
                    [meanInsertSize] => 331.83
                    [meanReadDepth] => 27.41
                    [variantsCalled] => 6069320
                    [variantsFiltered] => 5820812
                    [snpCount] => 4126024
                    [snpHom] => 1932444
                    [snpHet] => 2193580
                    [indelCount] => 1703167
                    [insHom] => 349282
                    [delHom] => 472563
                    [insHet] => 410853
                    [delHet] => 502387
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759343
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759343/V_37160-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242