Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721117
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 619
[wgsID] => 369
[fwdFile] => V_40194_R1.fastq.gz
[fwdMd5] => a2a3566e8f8982c2c49a2ddd0db3eb67
[revFile] => V_40194_R2.fastq.gz
[revMd5] => 35545f0b6ffca0a709ae46ce9215e048
[rawReads] => 769493016
[FastqRCS] => 1
[enaExperiment] => ERX10632458
[enaRun] => ERR11203074
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 838
[wgsID] => 369
[refGenome] => cf4
[dateSubmitted] => 2023-06-21 14:38:00
[dateCompleted] => 2023-06-22 08:24:00
[bamMd5] => cfdee839323cf9e895d875987730ec81
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 416256265
[primaryReads] =>
[mappedReads] => 415315141
[primaryMapped] =>
[pairedReads] => 392035026
[meanInsertSize] => 340.66
[meanReadDepth] => 18.86
[variantsCalled] => 6372013
[variantsFiltered] => 6128165
[snpCount] => 4327884
[snpHom] => 1768128
[snpHet] => 2559756
[indelCount] => 1810108
[insHom] => 287164
[delHom] => 404878
[insHet] => 511088
[delHet] => 642593
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21817172
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817172/V_40194-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242