Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099850
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 861
                    [wgsID] => 544
                    [fwdFile] => V_41490_R1.fastq.gz
                    [fwdMd5] => 6415bf50135e2f98655c07368d99d252
                    [revFile] => V_41490_R2.fastq.gz
                    [revMd5] => e79d6cee137b0b536290cf68628512e3
                    [rawReads] => 994661756
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611304
                    [enaRun] => ERR14209084
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1743
                    [wgsID] => 544
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-08 10:13:33
                    [dateCompleted] => 2025-01-09 19:31:41
                    [bamMd5] => 58bf3c4cf9085463515c37aa9b87ab79
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 796254151
                    [primaryReads] => 789598081
                    [mappedReads] => 795355305
                    [primaryMapped] => 788699235
                    [pairedReads] => 775884294
                    [meanInsertSize] => 393.68
                    [meanReadDepth] => 32.53
                    [variantsCalled] => 6152873
                    [variantsFiltered] => 5888620
                    [snpCount] => 4173912
                    [snpHom] => 1858918
                    [snpHet] => 2314994
                    [indelCount] => 1723633
                    [insHom] => 336622
                    [delHom] => 458124
                    [insHet] => 433534
                    [delHet] => 529212
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759320
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759320/V_41490-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242