Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099853
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 864
                    [wgsID] => 547
                    [fwdFile] => V_41494_R1.fastq.gz
                    [fwdMd5] => 99e554aca36ade986263a20e82928c95
                    [revFile] => V_41494_R2.fastq.gz
                    [revMd5] => 338b5bb13fc1b334d95b6cdbc08c60bd
                    [rawReads] => 1262358674
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611305
                    [enaRun] => ERR14209085
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1744
                    [wgsID] => 547
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-08 10:13:58
                    [dateCompleted] => 2025-01-10 00:40:55
                    [bamMd5] => 857eb35ba400e2c814fde79b8f9c7e5c
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1019179524
                    [primaryReads] => 1011149046
                    [mappedReads] => 1018091700
                    [primaryMapped] => 1010061222
                    [pairedReads] => 994641954
                    [meanInsertSize] => 398.17
                    [meanReadDepth] => 40.39
                    [variantsCalled] => 6341222
                    [variantsFiltered] => 6014430
                    [snpCount] => 4246667
                    [snpHom] => 1866901
                    [snpHet] => 2379766
                    [indelCount] => 1777631
                    [insHom] => 338473
                    [delHom] => 461341
                    [insHet] => 459772
                    [delHet] => 555382
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759321
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759321/V_41494-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242