Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190255
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 263
                    [wgsID] => 210
                    [fwdFile] => W_32556_R1.fastq.gz
                    [fwdMd5] => 1b21335bf30f3a6bb54138ab319989f0
                    [revFile] => W_32556_R2.fastq.gz
                    [revMd5] => fb6f2a2fa94a494a3fd6052ded3e3614
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10159184
                    [enaRun] => ERR10692477
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 355
                    [wgsID] => 210
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-21 15:09:00
                    [dateCompleted] => 2023-03-22 10:10:00
                    [bamMd5] => 37bd765bca249f60ad00126bf6ead492
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 920224199
                    [primaryReads] => 
                    [mappedReads] => 916967569
                    [primaryMapped] => 
                    [pairedReads] => 896316346
                    [meanInsertSize] => 442.99
                    [meanReadDepth] => 45.31
                    [variantsCalled] => 6515076
                    [variantsFiltered] => 6159112
                    [snpCount] => 4303944
                    [snpHom] => 1831496
                    [snpHet] => 2472448
                    [indelCount] => 1866751
                    [insHom] => 283454
                    [delHom] => 398011
                    [insHet] => 550872
                    [delHet] => 676883
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375576
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375576/W_32556-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242