Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190255
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 263
[wgsID] => 210
[fwdFile] => W_32556_R1.fastq.gz
[fwdMd5] => 1b21335bf30f3a6bb54138ab319989f0
[revFile] => W_32556_R2.fastq.gz
[revMd5] => fb6f2a2fa94a494a3fd6052ded3e3614
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10159184
[enaRun] => ERR10692477
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 355
[wgsID] => 210
[refGenome] => cf4
[dateSubmitted] => 2023-03-21 15:09:00
[dateCompleted] => 2023-03-22 10:10:00
[bamMd5] => 37bd765bca249f60ad00126bf6ead492
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 920224199
[primaryReads] =>
[mappedReads] => 916967569
[primaryMapped] =>
[pairedReads] => 896316346
[meanInsertSize] => 442.99
[meanReadDepth] => 45.31
[variantsCalled] => 6515076
[variantsFiltered] => 6159112
[snpCount] => 4303944
[snpHom] => 1831496
[snpHet] => 2472448
[indelCount] => 1866751
[insHom] => 283454
[delHom] => 398011
[insHet] => 550872
[delHet] => 676883
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21375576
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375576/W_32556-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242