Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN13269024
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 723
[wgsID] => 439
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 1939667452
[FastqRCS] => 0
[enaExperiment] => SRX7136396
[enaRun] => SRR10441626
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1541
[wgsID] => 439
[refGenome] => cf4
[dateSubmitted] => 2024-02-21 09:29:44
[dateCompleted] => 2024-02-22 15:58:49
[bamMd5] => 962ae07ed06eccb169c67c5e289805bf
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1034880283
[primaryReads] => 960920365
[mappedReads] => 1030040958
[primaryMapped] => 956081040
[pairedReads] => 873249574
[meanInsertSize] => 347.62
[meanReadDepth] => 41.87
[variantsCalled] => 6635931
[variantsFiltered] => 6169068
[snpCount] => 4259139
[snpHom] =>
[snpHet] =>
[indelCount] => 1921552
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
