Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189967
[wgsExptID] => 6
[Batch] => CGS_2
[SeqLaboratory] => Cambridge Genomic Services
[Platform] => Illumina
[InstrumentModel] => NextSeq 500
[ReadType] => 150bp:PAIRED:20X
[LibraryPrep] => In house, TruSeq DNA LT
[PcrFree] => Y
[SampleCount] => 2
[DateSubmitted] =>
[FastqID] => 460
[wgsID] => 102
[fwdFile] => WSS_25078_R1.fastq.gz
[fwdMd5] => e7bb4b2d46b22589aa89e35dae289819
[revFile] => WSS_25078_R2.fastq.gz
[revMd5] => c2d20a7059a4d91d78c2a907fe7ce7cd
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10825747
[enaRun] => ERR11417901
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 281
[wgsID] => 102
[refGenome] => cf4
[dateSubmitted] => 2023-02-09 11:01:00
[dateCompleted] => 2023-02-10 00:52:00
[bamMd5] => eb447fbe6252595a15a1aaf77e23ab42
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 426083257
[primaryReads] =>
[mappedReads] => 423788486
[primaryMapped] =>
[pairedReads] => 405486264
[meanInsertSize] => 380.09
[meanReadDepth] => 22.09
[variantsCalled] => 5641577
[variantsFiltered] => 5413022
[snpCount] => 3946494
[snpHom] =>
[snpHet] =>
[indelCount] => 1471902
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21790199
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790199/WSS_25078-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242