Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190228
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 267
[wgsID] => 137
[fwdFile] => WSS_25165_R1.fastq.gz
[fwdMd5] => 5e240bf2d47f0eb903781a7f5b43c9d7
[revFile] => WSS_25165_R2.fastq.gz
[revMd5] => 6835545d36fe1cbf588811bce1ed6254
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10686601
[enaRun] => ERR11278901
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 310
[wgsID] => 137
[refGenome] => cf4
[dateSubmitted] => 2023-03-16 12:17:00
[dateCompleted] => 2023-03-17 06:33:00
[bamMd5] => b3eb79e8896e563a8d04f59f3b4fcc5d
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 901453213
[primaryReads] =>
[mappedReads] => 899163292
[primaryMapped] =>
[pairedReads] => 880893764
[meanInsertSize] => 432.11
[meanReadDepth] => 43.36
[variantsCalled] => 6291192
[variantsFiltered] => 5911790
[snpCount] => 4122645
[snpHom] =>
[snpHet] =>
[indelCount] => 1799690
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21783016
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783016/WSS_25165-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242