Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790785
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 815
                    [wgsID] => 498
                    [fwdFile] => WSS_41355_R1.fastq.gz
                    [fwdMd5] => b97345a534e4f83a75cb403bf2cbfe46
                    [revFile] => WSS_41355_R2.fastq.gz
                    [revMd5] => 604db69b18c4d66e69073032ecff79d8
                    [rawReads] => 1015536318
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028988
                    [enaRun] => ERR13658286
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1664
                    [wgsID] => 498
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-19 11:13:25
                    [dateCompleted] => 2024-08-20 07:05:32
                    [bamMd5] => e507ec23c3dc837350a279fc158ba928
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1026996072
                    [primaryReads] => 1005274802
                    [mappedReads] => 1025201630
                    [primaryMapped] => 1003480360
                    [pairedReads] => 979856696
                    [meanInsertSize] => 329.11
                    [meanReadDepth] => 45.53
                    [variantsCalled] => 5948938
                    [variantsFiltered] => 5657242
                    [snpCount] => 3995430
                    [snpHom] => 2038829
                    [snpHet] => 1956601
                    [indelCount] => 1669851
                    [insHom] => 370337
                    [delHom] => 497278
                    [insHet] => 373828
                    [delHet] => 457873
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876992
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876992/WSS_41355-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242