Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189947
[wgsExptID] => 14
[Batch] => Edinburgh_4
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 13
[DateSubmitted] =>
[FastqID] => 270
[wgsID] => 226
[fwdFile] => XB_22305_R1.fastq.gz
[fwdMd5] => 304a317eceee01f27232762374160eb9
[revFile] => XB_22305_R2.fastq.gz
[revMd5] => eb6bd3e4610f58c879df2b7f48ef25dd
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10140550
[enaRun] => ERR10671803
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 370
[wgsID] => 226
[refGenome] => cf4
[dateSubmitted] => 2023-03-22 11:10:00
[dateCompleted] => 2023-03-23 06:23:00
[bamMd5] => 186a1d3419a77441628224801c2a366c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1006471237
[primaryReads] =>
[mappedReads] => 1004765097
[primaryMapped] =>
[pairedReads] => 986709500
[meanInsertSize] => 450.04
[meanReadDepth] => 34.43
[variantsCalled] => 6413567
[variantsFiltered] => 6092687
[snpCount] => 4269033
[snpHom] => 1568027
[snpHet] => 2701006
[indelCount] => 1835092
[insHom] => 255461
[delHom] => 361433
[insHet] => 562796
[delHet] => 698498
[genomicsDB] => 0
[varsity] => 0
[enaAnalysis] => ERZ21517650
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517650/XB_22305-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242