Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189947
                    [wgsExptID] => 14
                    [Batch] => Edinburgh_4
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 13
                    [DateSubmitted] => 
                    [FastqID] => 270
                    [wgsID] => 226
                    [fwdFile] => XB_22305_R1.fastq.gz
                    [fwdMd5] => 304a317eceee01f27232762374160eb9
                    [revFile] => XB_22305_R2.fastq.gz
                    [revMd5] => eb6bd3e4610f58c879df2b7f48ef25dd
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10140550
                    [enaRun] => ERR10671803
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 370
                    [wgsID] => 226
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-22 11:10:00
                    [dateCompleted] => 2023-03-23 06:23:00
                    [bamMd5] => 186a1d3419a77441628224801c2a366c
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1006471237
                    [primaryReads] => 
                    [mappedReads] => 1004765097
                    [primaryMapped] => 
                    [pairedReads] => 986709500
                    [meanInsertSize] => 450.04
                    [meanReadDepth] => 34.43
                    [variantsCalled] => 6413567
                    [variantsFiltered] => 6092687
                    [snpCount] => 4269033
                    [snpHom] => 1568027
                    [snpHet] => 2701006
                    [indelCount] => 1835092
                    [insHom] => 255461
                    [delHom] => 361433
                    [insHet] => 562796
                    [delHet] => 698498
                    [genomicsDB] => 0
                    [varsity] => 0
                    [enaAnalysis] => ERZ21517650
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517650/XB_22305-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242