Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190105
                    [wgsExptID] => 18
                    [Batch] => Edinburgh_8
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2017-12-12
                    [FastqID] => 272
                    [wgsID] => 301
                    [fwdFile] => XB_33712_R1.fastq.gz
                    [fwdMd5] => 463b72caf01769138a90c5f3101ef88a
                    [revFile] => XB_33712_R2.fastq.gz
                    [revMd5] => 22e4b88293def26f91cb43c261f22037
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664698
                    [enaRun] => ERR11256489
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 427
                    [wgsID] => 301
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-03 10:43:00
                    [dateCompleted] => 2023-02-03 23:54:00
                    [bamMd5] => decd4f0cbc65449421e42e091528b857
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 756691501
                    [primaryReads] => 
                    [mappedReads] => 752805905
                    [primaryMapped] => 
                    [pairedReads] => 735766352
                    [meanInsertSize] => 466.32
                    [meanReadDepth] => 39.13
                    [variantsCalled] => 6697255
                    [variantsFiltered] => 6355561
                    [snpCount] => 4457177
                    [snpHom] => 1647034
                    [snpHet] => 2810143
                    [indelCount] => 1911026
                    [insHom] => 260202
                    [delHom] => 367885
                    [insHet] => 603049
                    [delHet] => 728343
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21778109
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778109/XB_33712-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242