Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190105
[wgsExptID] => 18
[Batch] => Edinburgh_8
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2017-12-12
[FastqID] => 272
[wgsID] => 301
[fwdFile] => XB_33712_R1.fastq.gz
[fwdMd5] => 463b72caf01769138a90c5f3101ef88a
[revFile] => XB_33712_R2.fastq.gz
[revMd5] => 22e4b88293def26f91cb43c261f22037
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10664698
[enaRun] => ERR11256489
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 427
[wgsID] => 301
[refGenome] => cf4
[dateSubmitted] => 2023-02-03 10:43:00
[dateCompleted] => 2023-02-03 23:54:00
[bamMd5] => decd4f0cbc65449421e42e091528b857
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 756691501
[primaryReads] =>
[mappedReads] => 752805905
[primaryMapped] =>
[pairedReads] => 735766352
[meanInsertSize] => 466.32
[meanReadDepth] => 39.13
[variantsCalled] => 6697255
[variantsFiltered] => 6355561
[snpCount] => 4457177
[snpHom] => 1647034
[snpHet] => 2810143
[indelCount] => 1911026
[insHom] => 260202
[delHom] => 367885
[insHet] => 603049
[delHet] => 728343
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21778109
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778109/XB_33712-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242