Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA11296810
[wgsExptID] => 23
[Batch] => CRUKCI_1
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina DNA Prep
[PcrFree] => N
[SampleCount] => 23
[DateSubmitted] => 2021-06-11
[FastqID] => 635
[wgsID] => 12
[fwdFile] => XB_36092_R1.fastq.gz
[fwdMd5] => 4f5f099e18b50a3d6876f2aa482b9782
[revFile] => XB_36092_R2.fastq.gz
[revMd5] => 2c8ecdb4818417cd59ef2c79cf19b6c7
[rawReads] => 1200435820
[FastqRCS] => 1
[enaExperiment] => ERX10830380
[enaRun] => ERR11423072
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 32
[wgsID] => 12
[refGenome] => cf4
[dateSubmitted] => 2023-07-11 16:13:00
[dateCompleted] => 2023-07-19 01:02:00
[bamMd5] => 1134c8b858418d585326c14674d52808
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1210387902
[primaryReads] =>
[mappedReads] => 1208531661
[primaryMapped] =>
[pairedReads] => 1182355734
[meanInsertSize] => 368.52
[meanReadDepth] => 57.41
[variantsCalled] => 6822551
[variantsFiltered] => 6381364
[snpCount] => 4480319
[snpHom] => 1910663
[snpHet] => 2569656
[indelCount] => 1913119
[insHom] => 308577
[delHom] => 429527
[insHet] => 555781
[delHet] => 665228
[genomicsDB] => 0
[varsity] => 0
[enaAnalysis] => ERZ21659505
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659505/XB_36092-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242