Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN09882739
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 748
[wgsID] => 450
[fwdFile] => SRR7764562_1.fastq.gz
[fwdMd5] =>
[revFile] => SRR7764562_2.fastq.gz
[revMd5] =>
[rawReads] => 669692090
[FastqRCS] => 0
[enaExperiment] => SRX4620180
[enaRun] => SRR7764562
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1656
[wgsID] => 450
[refGenome] => cf4
[dateSubmitted] => 2024-05-15 16:28:45
[dateCompleted] => 2024-05-16 09:39:55
[bamMd5] => ca3a0e4bb87c4329c13842e29dada612
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 671124964
[primaryReads] => 669243988
[mappedReads] => 671019343
[primaryMapped] => 669138367
[pairedReads] => 661796828
[meanInsertSize] => 434.95
[meanReadDepth] => 39.72
[variantsCalled] => 6557344
[variantsFiltered] => 6193063
[snpCount] => 4337256
[snpHom] => 1740022
[snpHet] => 2597234
[indelCount] => 1867328
[insHom] => 273859
[delHom] => 389462
[insHet] => 560643
[delHet] => 685750
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
