Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190094
[wgsExptID] => 18
[Batch] => Edinburgh_8
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2017-12-12
[FastqID] => 181
[wgsID] => 299
[fwdFile] => G_26137_R1.fastq.gz
[fwdMd5] => f55a764edbefe2e402e0cce8d6473447
[revFile] => G_26137_R2.fastq.gz
[revMd5] => bff775c4efba85316a5022aaef627758
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10664696
[enaRun] => ERR11256487
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 425
[wgsID] => 299
[refGenome] => cf4
[dateSubmitted] => 2023-02-02 14:39:00
[dateCompleted] => 2023-02-03 09:04:00
[bamMd5] => 16cf49303afbafa409b4e0a71c77848d
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 903756906
[primaryReads] =>
[mappedReads] => 900071449
[primaryMapped] =>
[pairedReads] => 880887816
[meanInsertSize] => 479.11
[meanReadDepth] => 48.59
[variantsCalled] => 6335740
[variantsFiltered] => 5971329
[snpCount] => 4166539
[snpHom] => 1874411
[snpHet] => 2292128
[indelCount] => 1815932
[insHom] => 307366
[delHom] => 426984
[insHet] => 508679
[delHet] => 613220
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21778099
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778099/G_26137-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242