Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189964
[wgsExptID] => 5
[Batch] => CGS_1
[SeqLaboratory] => Cambridge Genomic Services
[Platform] => Illumina
[InstrumentModel] => NextSeq 500
[ReadType] => 150bp:PAIRED:20X
[LibraryPrep] => In house, TruSeq DNA LT
[PcrFree] => Y
[SampleCount] => 2
[DateSubmitted] =>
[FastqID] => 458
[wgsID] => 99
[fwdFile] => G_26133_R1.fastq.gz
[fwdMd5] => 67873034284b5601683cd6a1a8c6fbfc
[revFile] => G_26133_R2.fastq.gz
[revMd5] => 3adf44c969e780c3ed67041a7e449f19
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10825745
[enaRun] => ERR11417899
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 279
[wgsID] => 99
[refGenome] => cf4
[dateSubmitted] => 2023-02-09 10:59:00
[dateCompleted] => 2023-02-10 03:10:00
[bamMd5] => 52822f7f232d6feabcb40acd496cfec0
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 500236001
[primaryReads] =>
[mappedReads] => 496410539
[primaryMapped] =>
[pairedReads] => 481297989
[meanInsertSize] => 395.26
[meanReadDepth] => 25.06
[variantsCalled] => 5383339
[variantsFiltered] => 5166669
[snpCount] => 3830722
[snpHom] =>
[snpHet] =>
[indelCount] => 1340406
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21790196
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790196/G_26133-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242