Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721124
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 602
                    [wgsID] => 376
                    [fwdFile] => SS_38436_R1.fastq.gz
                    [fwdMd5] => 5919b0a9d1f884e4a155a6ddb36d9752
                    [revFile] => SS_38436_R2.fastq.gz
                    [revMd5] => 8054ffedfd8c6bb4bc917d257c857373
                    [rawReads] => 909973688
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632441
                    [enaRun] => ERR11203057
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 821
                    [wgsID] => 376
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-19 11:13:00
                    [dateCompleted] => 2023-06-20 02:01:00
                    [bamMd5] => 446e4535aa935a24e7db6cd77d2eb569
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 436717103
                    [primaryReads] => 
                    [mappedReads] => 435337912
                    [primaryMapped] => 
                    [pairedReads] => 420090604
                    [meanInsertSize] => 403.03
                    [meanReadDepth] => 21.74
                    [variantsCalled] => 5843834
                    [variantsFiltered] => 5567409
                    [snpCount] => 3900339
                    [snpHom] => 2193737
                    [snpHet] => 1706602
                    [indelCount] => 1674192
                    [insHom] => 367260
                    [delHom] => 505910
                    [insHet] => 369414
                    [delHet] => 456112
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817165
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817165/SS_38436-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242