Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721124
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 602
[wgsID] => 376
[fwdFile] => SS_38436_R1.fastq.gz
[fwdMd5] => 5919b0a9d1f884e4a155a6ddb36d9752
[revFile] => SS_38436_R2.fastq.gz
[revMd5] => 8054ffedfd8c6bb4bc917d257c857373
[rawReads] => 909973688
[FastqRCS] => 1
[enaExperiment] => ERX10632441
[enaRun] => ERR11203057
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 821
[wgsID] => 376
[refGenome] => cf4
[dateSubmitted] => 2023-06-19 11:13:00
[dateCompleted] => 2023-06-20 02:01:00
[bamMd5] => 446e4535aa935a24e7db6cd77d2eb569
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 436717103
[primaryReads] =>
[mappedReads] => 435337912
[primaryMapped] =>
[pairedReads] => 420090604
[meanInsertSize] => 403.03
[meanReadDepth] => 21.74
[variantsCalled] => 5843834
[variantsFiltered] => 5567409
[snpCount] => 3900339
[snpHom] => 2193737
[snpHet] => 1706602
[indelCount] => 1674192
[insHom] => 367260
[delHom] => 505910
[insHet] => 369414
[delHet] => 456112
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21817165
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817165/SS_38436-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242