Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190225
                    [wgsExptID] => 12
                    [Batch] => Edinburgh_2
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 36
                    [DateSubmitted] => 
                    [FastqID] => 255
                    [wgsID] => 138
                    [fwdFile] => SS_26491_R1.fastq.gz
                    [fwdMd5] => 277698fafc65a7164d1e8549aca7766e
                    [revFile] => SS_26491_R2.fastq.gz
                    [revMd5] => 4110e9f50ce08a6aa43dd060dd8f7b8d
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10686602
                    [enaRun] => ERR11278902
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 311
                    [wgsID] => 138
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-14 09:45:00
                    [dateCompleted] => 2023-03-15 03:37:00
                    [bamMd5] => 6f7f4febfe8868e91d2d43ae3c0a3a15
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 808557903
                    [primaryReads] => 
                    [mappedReads] => 806891740
                    [primaryMapped] => 
                    [pairedReads] => 789624333
                    [meanInsertSize] => 434.47
                    [meanReadDepth] => 38.94
                    [variantsCalled] => 6160792
                    [variantsFiltered] => 5783293
                    [snpCount] => 4025295
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1767701
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21783013
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783013/SS_26491-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242