Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190225
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 255
[wgsID] => 138
[fwdFile] => SS_26491_R1.fastq.gz
[fwdMd5] => 277698fafc65a7164d1e8549aca7766e
[revFile] => SS_26491_R2.fastq.gz
[revMd5] => 4110e9f50ce08a6aa43dd060dd8f7b8d
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10686602
[enaRun] => ERR11278902
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 311
[wgsID] => 138
[refGenome] => cf4
[dateSubmitted] => 2023-03-14 09:45:00
[dateCompleted] => 2023-03-15 03:37:00
[bamMd5] => 6f7f4febfe8868e91d2d43ae3c0a3a15
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 808557903
[primaryReads] =>
[mappedReads] => 806891740
[primaryMapped] =>
[pairedReads] => 789624333
[meanInsertSize] => 434.47
[meanReadDepth] => 38.94
[variantsCalled] => 6160792
[variantsFiltered] => 5783293
[snpCount] => 4025295
[snpHom] =>
[snpHet] =>
[indelCount] => 1767701
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21783013
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783013/SS_26491-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242