Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721143
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 580
                    [wgsID] => 396
                    [fwdFile] => SS_35813_R1.fastq.gz
                    [fwdMd5] => 0d1402054368530f8f305a75be5b0d7f
                    [revFile] => SS_35813_R2.fastq.gz
                    [revMd5] => bcd693d85758303589a2f7d231ec3796
                    [rawReads] => 698988944
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632419
                    [enaRun] => ERR11203035
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 799
                    [wgsID] => 396
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-16 12:32:00
                    [dateCompleted] => 2023-06-17 01:30:00
                    [bamMd5] => 406251f4a84a3bbe6b826c5a0410cff1
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 598379573
                    [primaryReads] => 
                    [mappedReads] => 597504633
                    [primaryMapped] => 
                    [pairedReads] => 577003294
                    [meanInsertSize] => 349.45
                    [meanReadDepth] => 28.59
                    [variantsCalled] => 5997876
                    [variantsFiltered] => 5685592
                    [snpCount] => 3973080
                    [snpHom] => 2163637
                    [snpHet] => 1809443
                    [indelCount] => 1720670
                    [insHom] => 361349
                    [delHom] => 498707
                    [insHet] => 398944
                    [delHet] => 490058
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817164
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817164/SS_35813-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242