Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721143
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 580
[wgsID] => 396
[fwdFile] => SS_35813_R1.fastq.gz
[fwdMd5] => 0d1402054368530f8f305a75be5b0d7f
[revFile] => SS_35813_R2.fastq.gz
[revMd5] => bcd693d85758303589a2f7d231ec3796
[rawReads] => 698988944
[FastqRCS] => 1
[enaExperiment] => ERX10632419
[enaRun] => ERR11203035
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 799
[wgsID] => 396
[refGenome] => cf4
[dateSubmitted] => 2023-06-16 12:32:00
[dateCompleted] => 2023-06-17 01:30:00
[bamMd5] => 406251f4a84a3bbe6b826c5a0410cff1
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 598379573
[primaryReads] =>
[mappedReads] => 597504633
[primaryMapped] =>
[pairedReads] => 577003294
[meanInsertSize] => 349.45
[meanReadDepth] => 28.59
[variantsCalled] => 5997876
[variantsFiltered] => 5685592
[snpCount] => 3973080
[snpHom] => 2163637
[snpHet] => 1809443
[indelCount] => 1720670
[insHom] => 361349
[delHom] => 498707
[insHet] => 398944
[delHet] => 490058
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21817164
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817164/SS_35813-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242