Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099861
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 872
[wgsID] => 555
[fwdFile] => XB_41594_R1.fastq.gz
[fwdMd5] => b62b6433015decd715bf759b00701f98
[revFile] => XB_41594_R2.fastq.gz
[revMd5] => be26f9ba3c9e3c9a9523fb1046153ffd
[rawReads] => 927529358
[FastqRCS] => 1
[enaExperiment] => ERX13611306
[enaRun] => ERR14209086
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1745
[wgsID] => 555
[refGenome] => cf4
[dateSubmitted] => 2025-01-08 10:14:23
[dateCompleted] => 2025-01-09 21:34:54
[bamMd5] => 9c3d18a6c10d3de9c0120a9ad1cb104e
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 759044891
[primaryReads] => 752544519
[mappedReads] => 758146914
[primaryMapped] => 751646542
[pairedReads] => 738432148
[meanInsertSize] => 389.90
[meanReadDepth] => 29.49
[variantsCalled] => 6005375
[variantsFiltered] => 5695750
[snpCount] => 4024183
[snpHom] => 2078677
[snpHet] => 1945506
[indelCount] => 1679109
[insHom] => 381916
[delHom] => 511048
[insHet] => 366109
[delHet] => 448438
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ25759322
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759322/XB_41594-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242