Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190109
[wgsExptID] => 19
[Batch] => Edinburgh_9
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2018-04-26
[FastqID] => 142
[wgsID] => 82
[fwdFile] => BoT_32595_R1.fastq.gz
[fwdMd5] => 631df17621b92729d56977c04dd465f6
[revFile] => BoT_32595_R2.fastq.gz
[revMd5] => 98ac00265fc16ec877628dc56c4a2eba
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10648180
[enaRun] => ERR11223851
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 61
[wgsID] => 82
[refGenome] => cf4
[dateSubmitted] => 2022-02-15 10:51:00
[dateCompleted] => 2022-02-16 05:50:00
[bamMd5] => d733a99b8d24f264ade7bbb0fc1b7e7a
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1010231500
[primaryReads] =>
[mappedReads] => 1006845101
[primaryMapped] =>
[pairedReads] => 985264020
[meanInsertSize] => 488.22
[meanReadDepth] => 44.54
[variantsCalled] => 6255291
[variantsFiltered] => 5863532
[snpCount] => 4078876
[snpHom] => 2039049
[snpHet] => 2039827
[indelCount] => 1795283
[insHom] => 321824
[delHom] => 448132
[insHet] => 480699
[delHet] => 580610
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21775555
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775555/BoT_32595-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242