Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190109
                    [wgsExptID] => 19
                    [Batch] => Edinburgh_9
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2018-04-26
                    [FastqID] => 142
                    [wgsID] => 82
                    [fwdFile] => BoT_32595_R1.fastq.gz
                    [fwdMd5] => 631df17621b92729d56977c04dd465f6
                    [revFile] => BoT_32595_R2.fastq.gz
                    [revMd5] => 98ac00265fc16ec877628dc56c4a2eba
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10648180
                    [enaRun] => ERR11223851
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 61
                    [wgsID] => 82
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-02-15 10:51:00
                    [dateCompleted] => 2022-02-16 05:50:00
                    [bamMd5] => d733a99b8d24f264ade7bbb0fc1b7e7a
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1010231500
                    [primaryReads] => 
                    [mappedReads] => 1006845101
                    [primaryMapped] => 
                    [pairedReads] => 985264020
                    [meanInsertSize] => 488.22
                    [meanReadDepth] => 44.54
                    [variantsCalled] => 6255291
                    [variantsFiltered] => 5863532
                    [snpCount] => 4078876
                    [snpHom] => 2039049
                    [snpHet] => 2039827
                    [indelCount] => 1795283
                    [insHom] => 321824
                    [delHom] => 448132
                    [insHet] => 480699
                    [delHet] => 580610
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21775555
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775555/BoT_32595-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242