Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190158
                    [wgsExptID] => 14
                    [Batch] => Edinburgh_4
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 13
                    [DateSubmitted] => 
                    [FastqID] => 141
                    [wgsID] => 228
                    [fwdFile] => BoT_28523_R1.fastq.gz
                    [fwdMd5] => 25d79936c477f152464c9902942e8375
                    [revFile] => BoT_28523_R2.fastq.gz
                    [revMd5] => ce8a8bfdb6926523dc3256b10e4961e8
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679332
                    [enaRun] => ERR11271762
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 53
                    [wgsID] => 228
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-02-11 11:11:00
                    [dateCompleted] => 2022-02-17 19:44:00
                    [bamMd5] => eda553e266941339bbc392a04d4be686
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 981028904
                    [primaryReads] => 
                    [mappedReads] => 978228540
                    [primaryMapped] => 
                    [pairedReads] => 955995890
                    [meanInsertSize] => 406.12
                    [meanReadDepth] => 32.67
                    [variantsCalled] => 6080832
                    [variantsFiltered] => 5747179
                    [snpCount] => 4017208
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1738046
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21517642
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517642/BoT_28523-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242