Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190158
[wgsExptID] => 14
[Batch] => Edinburgh_4
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 13
[DateSubmitted] =>
[FastqID] => 141
[wgsID] => 228
[fwdFile] => BoT_28523_R1.fastq.gz
[fwdMd5] => 25d79936c477f152464c9902942e8375
[revFile] => BoT_28523_R2.fastq.gz
[revMd5] => ce8a8bfdb6926523dc3256b10e4961e8
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679332
[enaRun] => ERR11271762
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 53
[wgsID] => 228
[refGenome] => cf4
[dateSubmitted] => 2022-02-11 11:11:00
[dateCompleted] => 2022-02-17 19:44:00
[bamMd5] => eda553e266941339bbc392a04d4be686
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 981028904
[primaryReads] =>
[mappedReads] => 978228540
[primaryMapped] =>
[pairedReads] => 955995890
[meanInsertSize] => 406.12
[meanReadDepth] => 32.67
[variantsCalled] => 6080832
[variantsFiltered] => 5747179
[snpCount] => 4017208
[snpHom] =>
[snpHet] =>
[indelCount] => 1738046
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21517642
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517642/BoT_28523-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242