Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190110
                    [wgsExptID] => 19
                    [Batch] => Edinburgh_9
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2018-04-26
                    [FastqID] => 143
                    [wgsID] => 81
                    [fwdFile] => BoT_33129_R1.fastq.gz
                    [fwdMd5] => 5f25613de04c401d31873cf083c6cdb5
                    [revFile] => BoT_33129_R2.fastq.gz
                    [revMd5] => a3a52fed4e7b18b1cbcb631312a5f45b
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10648181
                    [enaRun] => ERR11223852
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 62
                    [wgsID] => 81
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-02-11 11:11:00
                    [dateCompleted] => 2022-02-12 04:39:00
                    [bamMd5] => b308b1dfbc9f0fc7ef348ac93ce8c0aa
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1006526744
                    [primaryReads] => 
                    [mappedReads] => 906019208
                    [primaryMapped] => 
                    [pairedReads] => 883844044
                    [meanInsertSize] => 465.33
                    [meanReadDepth] => 33.22
                    [variantsCalled] => 6168460
                    [variantsFiltered] => 5826373
                    [snpCount] => 4046920
                    [snpHom] => 2055474
                    [snpHet] => 1991446
                    [indelCount] => 1789354
                    [insHom] => 324225
                    [delHom] => 451450
                    [insHet] => 471570
                    [delHet] => 577447
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21775556
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775556/BoT_33129-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242