Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190111
[wgsExptID] => 19
[Batch] => Edinburgh_9
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2018-04-26
[FastqID] => 144
[wgsID] => 80
[fwdFile] => BoT_33421_R1.fastq.gz
[fwdMd5] => 484780d74f19b079d163704f550d4b31
[revFile] => BoT_33421_R2.fastq.gz
[revMd5] => fa088b149bcd20ecdc7a9ff41c39a7ba
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10648182
[enaRun] => ERR11223853
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 63
[wgsID] => 80
[refGenome] => cf4
[dateSubmitted] => 2022-02-11 11:11:00
[dateCompleted] => 2022-02-12 05:46:00
[bamMd5] => 9df2b04c14532e22c91192a3bb3cb8d3
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1018265014
[primaryReads] =>
[mappedReads] => 1013615641
[primaryMapped] =>
[pairedReads] => 989276178
[meanInsertSize] => 492.58
[meanReadDepth] => 44.34
[variantsCalled] => 6158110
[variantsFiltered] => 5758936
[snpCount] => 3996270
[snpHom] => 2073399
[snpHet] => 1922871
[indelCount] => 1772888
[insHom] => 328018
[delHom] => 456908
[insHet] => 462236
[delHet] => 560061
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21775557
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775557/BoT_33421-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242