Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190111
                    [wgsExptID] => 19
                    [Batch] => Edinburgh_9
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2018-04-26
                    [FastqID] => 144
                    [wgsID] => 80
                    [fwdFile] => BoT_33421_R1.fastq.gz
                    [fwdMd5] => 484780d74f19b079d163704f550d4b31
                    [revFile] => BoT_33421_R2.fastq.gz
                    [revMd5] => fa088b149bcd20ecdc7a9ff41c39a7ba
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10648182
                    [enaRun] => ERR11223853
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 63
                    [wgsID] => 80
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-02-11 11:11:00
                    [dateCompleted] => 2022-02-12 05:46:00
                    [bamMd5] => 9df2b04c14532e22c91192a3bb3cb8d3
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1018265014
                    [primaryReads] => 
                    [mappedReads] => 1013615641
                    [primaryMapped] => 
                    [pairedReads] => 989276178
                    [meanInsertSize] => 492.58
                    [meanReadDepth] => 44.34
                    [variantsCalled] => 6158110
                    [variantsFiltered] => 5758936
                    [snpCount] => 3996270
                    [snpHom] => 2073399
                    [snpHet] => 1922871
                    [indelCount] => 1772888
                    [insHom] => 328018
                    [delHom] => 456908
                    [insHet] => 462236
                    [delHet] => 560061
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21775557
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775557/BoT_33421-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242