Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190112
[wgsExptID] => 19
[Batch] => Edinburgh_9
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2018-04-26
[FastqID] => 145
[wgsID] => 79
[fwdFile] => BoT_33725_R1.fastq.gz
[fwdMd5] => 17e922ac1e7d06b423e3b4b621b49f31
[revFile] => BoT_33725_R2.fastq.gz
[revMd5] => baa9929a276779f3d7c4c18b29381ce7
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10648183
[enaRun] => ERR11223854
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 64
[wgsID] => 79
[refGenome] => cf4
[dateSubmitted] => 2022-02-11 11:11:00
[dateCompleted] => 2022-02-12 04:39:00
[bamMd5] => 7e75a1c45b75ed3affec05ce91830958
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 987016374
[primaryReads] =>
[mappedReads] => 892172642
[primaryMapped] =>
[pairedReads] => 874355536
[meanInsertSize] => 421.29
[meanReadDepth] => 40.83
[variantsCalled] => 6186770
[variantsFiltered] => 5836690
[snpCount] => 4049950
[snpHom] => 1999912
[snpHet] => 2050038
[indelCount] => 1796980
[insHom] => 312836
[delHom] => 438997
[insHet] => 487035
[delHet] => 594683
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21775558
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775558/BoT_33725-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242