Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190112
                    [wgsExptID] => 19
                    [Batch] => Edinburgh_9
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2018-04-26
                    [FastqID] => 145
                    [wgsID] => 79
                    [fwdFile] => BoT_33725_R1.fastq.gz
                    [fwdMd5] => 17e922ac1e7d06b423e3b4b621b49f31
                    [revFile] => BoT_33725_R2.fastq.gz
                    [revMd5] => baa9929a276779f3d7c4c18b29381ce7
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10648183
                    [enaRun] => ERR11223854
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 64
                    [wgsID] => 79
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-02-11 11:11:00
                    [dateCompleted] => 2022-02-12 04:39:00
                    [bamMd5] => 7e75a1c45b75ed3affec05ce91830958
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 987016374
                    [primaryReads] => 
                    [mappedReads] => 892172642
                    [primaryMapped] => 
                    [pairedReads] => 874355536
                    [meanInsertSize] => 421.29
                    [meanReadDepth] => 40.83
                    [variantsCalled] => 6186770
                    [variantsFiltered] => 5836690
                    [snpCount] => 4049950
                    [snpHom] => 1999912
                    [snpHet] => 2050038
                    [indelCount] => 1796980
                    [insHom] => 312836
                    [delHom] => 438997
                    [insHet] => 487035
                    [delHet] => 594683
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21775558
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775558/BoT_33725-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242