Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296816
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 624
                    [wgsID] => 2
                    [fwdFile] => CT_34722_R1.fastq.gz
                    [fwdMd5] => 9aafab310c54688be26e1003d4446688
                    [revFile] => CT_34722_R2.fastq.gz
                    [revMd5] => b16bbbfaf8afccc34639418ecc66eafa
                    [rawReads] => 998772390
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830369
                    [enaRun] => ERR11423061
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 37
                    [wgsID] => 2
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-07 10:55:00
                    [dateCompleted] => 2023-07-08 03:55:00
                    [bamMd5] => 265b8d84224f19b29cd8608d431abbeb
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 563113221
                    [primaryReads] => 
                    [mappedReads] => 561823193
                    [primaryMapped] => 
                    [pairedReads] => 546321182
                    [meanInsertSize] => 342.12
                    [meanReadDepth] => 26.77
                    [variantsCalled] => 6288228
                    [variantsFiltered] => 6000468
                    [snpCount] => 4208096
                    [snpHom] => 1840932
                    [snpHet] => 2367164
                    [indelCount] => 1802148
                    [insHom] => 301967
                    [delHom] => 426533
                    [insHet] => 495972
                    [delHet] => 614772
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21573662
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21573662/CT_34722-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242