Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA11296816
[wgsExptID] => 23
[Batch] => CRUKCI_1
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina DNA Prep
[PcrFree] => N
[SampleCount] => 23
[DateSubmitted] => 2021-06-11
[FastqID] => 624
[wgsID] => 2
[fwdFile] => CT_34722_R1.fastq.gz
[fwdMd5] => 9aafab310c54688be26e1003d4446688
[revFile] => CT_34722_R2.fastq.gz
[revMd5] => b16bbbfaf8afccc34639418ecc66eafa
[rawReads] => 998772390
[FastqRCS] => 1
[enaExperiment] => ERX10830369
[enaRun] => ERR11423061
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 37
[wgsID] => 2
[refGenome] => cf4
[dateSubmitted] => 2023-07-07 10:55:00
[dateCompleted] => 2023-07-08 03:55:00
[bamMd5] => 265b8d84224f19b29cd8608d431abbeb
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 563113221
[primaryReads] =>
[mappedReads] => 561823193
[primaryMapped] =>
[pairedReads] => 546321182
[meanInsertSize] => 342.12
[meanReadDepth] => 26.77
[variantsCalled] => 6288228
[variantsFiltered] => 6000468
[snpCount] => 4208096
[snpHom] => 1840932
[snpHet] => 2367164
[indelCount] => 1802148
[insHom] => 301967
[delHom] => 426533
[insHet] => 495972
[delHet] => 614772
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21573662
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21573662/CT_34722-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242