Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296818
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 643
                    [wgsID] => 20
                    [fwdFile] => CT_37261_R1.fastq.gz
                    [fwdMd5] => 71e8626a8641dda089f606db8ab27f81
                    [revFile] => CT_37261_R2.fastq.gz
                    [revMd5] => 7c963c07d2c90cf9a7c0fe64c2cfedc4
                    [rawReads] => 960024078
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830388
                    [enaRun] => ERR11423080
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 39
                    [wgsID] => 20
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-19 10:59:00
                    [dateCompleted] => 2023-07-20 08:58:00
                    [bamMd5] => 03dd0766e4deb7c11ed7f43162e9d948
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 902545802
                    [primaryReads] => 
                    [mappedReads] => 901356443
                    [primaryMapped] => 
                    [pairedReads] => 881007726
                    [meanInsertSize] => 365.53
                    [meanReadDepth] => 43.95
                    [variantsCalled] => 6466941
                    [variantsFiltered] => 6105122
                    [snpCount] => 4272120
                    [snpHom] => 1851631
                    [snpHet] => 2420489
                    [indelCount] => 1843918
                    [insHom] => 298409
                    [delHom] => 419067
                    [insHet] => 527213
                    [delHet] => 641339
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659488
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659488/CT_37261-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242