Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721138
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 572
                    [wgsID] => 391
                    [fwdFile] => MS_31387_R1.fastq.gz
                    [fwdMd5] => ccac161bc4ae732a0938dbfd1f707215
                    [revFile] => MS_31387_R2.fastq.gz
                    [revMd5] => ca65f5183d4d6fb5b8392ae94bc1fa04
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632411
                    [enaRun] => ERR11203027
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 791
                    [wgsID] => 391
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-05-16 16:26:00
                    [dateCompleted] => 2023-05-17 09:43:00
                    [bamMd5] => 255f3cf1f1c3b1c173fc98ad0e2df9c2
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 589633395
                    [primaryReads] => 
                    [mappedReads] => 588367310
                    [primaryMapped] => 
                    [pairedReads] => 569330712
                    [meanInsertSize] => 368.55
                    [meanReadDepth] => 28.14
                    [variantsCalled] => 5961260
                    [variantsFiltered] => 5664713
                    [snpCount] => 3961710
                    [snpHom] => 2164019
                    [snpHet] => 1797691
                    [indelCount] => 1711142
                    [insHom] => 363370
                    [delHom] => 498822
                    [insHet] => 393153
                    [delHet] => 483572
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817133
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817133/MS_31387-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242