Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721134
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 567
[wgsID] => 387
[fwdFile] => MS_22353_R1.fastq.gz
[fwdMd5] => f89fff8276ba36bea22996911b4ac172
[revFile] => MS_22353_R2.fastq.gz
[revMd5] => 902b5bb40d600f7c9dd5c4aaacafbf40
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632406
[enaRun] => ERR11203022
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 786
[wgsID] => 387
[refGenome] => cf4
[dateSubmitted] => 2023-05-15 11:17:00
[dateCompleted] => 2023-05-16 02:04:00
[bamMd5] => 118236ac6059fbd8fa99b0e52166aed3
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 564038621
[primaryReads] =>
[mappedReads] => 562938705
[primaryMapped] =>
[pairedReads] => 544807914
[meanInsertSize] => 365.38
[meanReadDepth] => 26.86
[variantsCalled] => 6098128
[variantsFiltered] => 5788607
[snpCount] => 4053652
[snpHom] => 2093037
[snpHet] => 1960615
[indelCount] => 1743641
[insHom] => 349533
[delHom] => 482198
[insHet] => 422117
[delHet] => 519668
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817131
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817131/MS_22353-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242