Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721134
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 567
                    [wgsID] => 387
                    [fwdFile] => MS_22353_R1.fastq.gz
                    [fwdMd5] => f89fff8276ba36bea22996911b4ac172
                    [revFile] => MS_22353_R2.fastq.gz
                    [revMd5] => 902b5bb40d600f7c9dd5c4aaacafbf40
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632406
                    [enaRun] => ERR11203022
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 786
                    [wgsID] => 387
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-05-15 11:17:00
                    [dateCompleted] => 2023-05-16 02:04:00
                    [bamMd5] => 118236ac6059fbd8fa99b0e52166aed3
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 564038621
                    [primaryReads] => 
                    [mappedReads] => 562938705
                    [primaryMapped] => 
                    [pairedReads] => 544807914
                    [meanInsertSize] => 365.38
                    [meanReadDepth] => 26.86
                    [variantsCalled] => 6098128
                    [variantsFiltered] => 5788607
                    [snpCount] => 4053652
                    [snpHom] => 2093037
                    [snpHet] => 1960615
                    [indelCount] => 1743641
                    [insHom] => 349533
                    [delHom] => 482198
                    [insHet] => 422117
                    [delHet] => 519668
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817131
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817131/MS_22353-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242