Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721140
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 574
[wgsID] => 393
[fwdFile] => MS_31477_R1.fastq.gz
[fwdMd5] => ada3b21f08baad29f8426f4bded58111
[revFile] => MS_31477_R2.fastq.gz
[revMd5] => 02aca05284494f3e8f1f9689e5c12780
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632413
[enaRun] => ERR11203029
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 793
[wgsID] => 393
[refGenome] => cf4
[dateSubmitted] => 2023-05-17 10:35:00
[dateCompleted] => 2023-05-18 08:36:00
[bamMd5] => 2e88c648906a3f88e87f9c6b22a5875d
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 508966038
[primaryReads] =>
[mappedReads] => 507336896
[primaryMapped] =>
[pairedReads] => 487305318
[meanInsertSize] => 436.46
[meanReadDepth] => 25.12
[variantsCalled] => 5777922
[variantsFiltered] => 5473667
[snpCount] => 3825750
[snpHom] => 2283688
[snpHet] => 1542062
[indelCount] => 1654932
[insHom] => 384971
[delHom] => 524848
[insHet] => 344327
[delHet] => 423685
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817135
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817135/MS_31477-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242