Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721139
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 573
                    [wgsID] => 392
                    [fwdFile] => MS_31388_R1.fastq.gz
                    [fwdMd5] => 88e7ee9c3d316c1ea3271d4b632a616b
                    [revFile] => MS_31388_R2.fastq.gz
                    [revMd5] => 07698db9f60a7fc008a63eeaf9d1de47
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632412
                    [enaRun] => ERR11203028
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 792
                    [wgsID] => 392
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-05-16 17:05:00
                    [dateCompleted] => 2023-05-18 04:58:00
                    [bamMd5] => 66885c6aa29e8bd0b53d420727f72ae0
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 468116877
                    [primaryReads] => 
                    [mappedReads] => 467203232
                    [primaryMapped] => 
                    [pairedReads] => 450838594
                    [meanInsertSize] => 380.17
                    [meanReadDepth] => 22.21
                    [variantsCalled] => 6033776
                    [variantsFiltered] => 5721693
                    [snpCount] => 4015469
                    [snpHom] => 2071370
                    [snpHet] => 1944099
                    [indelCount] => 1714546
                    [insHom] => 342775
                    [delHom] => 473451
                    [insHet] => 410898
                    [delHet] => 515424
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817134
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817134/MS_31388-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242