Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721118
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 588
                    [wgsID] => 370
                    [fwdFile] => WI_37593_R1.fastq.gz
                    [fwdMd5] => 8c35b7f3eb3e7210f09fea8da65e9f80
                    [revFile] => WI_37593_R2.fastq.gz
                    [revMd5] => 7c0a73687453a478dbe146278adefb9f
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632427
                    [enaRun] => ERR11203043
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 807
                    [wgsID] => 370
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-13 12:27:00
                    [dateCompleted] => 2023-06-14 01:03:00
                    [bamMd5] => cf932a5e172a6fbe6c4bd0830ab30b3b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 677486035
                    [primaryReads] => 
                    [mappedReads] => 676662851
                    [primaryMapped] => 
                    [pairedReads] => 654151268
                    [meanInsertSize] => 378.41
                    [meanReadDepth] => 33.41
                    [variantsCalled] => 5813900
                    [variantsFiltered] => 5481745
                    [snpCount] => 3816865
                    [snpHom] => 2173760
                    [snpHet] => 1643105
                    [indelCount] => 1672591
                    [insHom] => 364027
                    [delHom] => 502115
                    [insHet] => 375692
                    [delHet] => 457011
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817176
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817176/WI_37593-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242