Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721118
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 588
[wgsID] => 370
[fwdFile] => WI_37593_R1.fastq.gz
[fwdMd5] => 8c35b7f3eb3e7210f09fea8da65e9f80
[revFile] => WI_37593_R2.fastq.gz
[revMd5] => 7c0a73687453a478dbe146278adefb9f
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632427
[enaRun] => ERR11203043
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 807
[wgsID] => 370
[refGenome] => cf4
[dateSubmitted] => 2023-06-13 12:27:00
[dateCompleted] => 2023-06-14 01:03:00
[bamMd5] => cf932a5e172a6fbe6c4bd0830ab30b3b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 677486035
[primaryReads] =>
[mappedReads] => 676662851
[primaryMapped] =>
[pairedReads] => 654151268
[meanInsertSize] => 378.41
[meanReadDepth] => 33.41
[variantsCalled] => 5813900
[variantsFiltered] => 5481745
[snpCount] => 3816865
[snpHom] => 2173760
[snpHet] => 1643105
[indelCount] => 1672591
[insHom] => 364027
[delHom] => 502115
[insHet] => 375692
[delHet] => 457011
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21817176
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817176/WI_37593-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242