Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721119
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 589
[wgsID] => 371
[fwdFile] => WI_37601_R1.fastq.gz
[fwdMd5] => 606dd62ddca7f548cc631d46597c0b9a
[revFile] => WI_37601_R2.fastq.gz
[revMd5] => 3b38657065c7f4418ba638a7f892a7da
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632428
[enaRun] => ERR11203044
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 808
[wgsID] => 371
[refGenome] => cf4
[dateSubmitted] => 2023-06-13 12:27:00
[dateCompleted] => 2023-06-13 23:43:00
[bamMd5] => b7ebdf14b6e9cd789fa5dbd1ab5ef978
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 604270918
[primaryReads] =>
[mappedReads] => 603491636
[primaryMapped] =>
[pairedReads] => 586112194
[meanInsertSize] => 380.53
[meanReadDepth] => 30.41
[variantsCalled] => 5875529
[variantsFiltered] => 5585651
[snpCount] => 3897203
[snpHom] => 2133582
[snpHet] => 1763621
[indelCount] => 1696310
[insHom] => 358177
[delHom] => 494644
[insHet] => 392108
[delHet] => 478545
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21817177
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817177/WI_37601-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242