Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721119
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 589
                    [wgsID] => 371
                    [fwdFile] => WI_37601_R1.fastq.gz
                    [fwdMd5] => 606dd62ddca7f548cc631d46597c0b9a
                    [revFile] => WI_37601_R2.fastq.gz
                    [revMd5] => 3b38657065c7f4418ba638a7f892a7da
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632428
                    [enaRun] => ERR11203044
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 808
                    [wgsID] => 371
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-13 12:27:00
                    [dateCompleted] => 2023-06-13 23:43:00
                    [bamMd5] => b7ebdf14b6e9cd789fa5dbd1ab5ef978
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 604270918
                    [primaryReads] => 
                    [mappedReads] => 603491636
                    [primaryMapped] => 
                    [pairedReads] => 586112194
                    [meanInsertSize] => 380.53
                    [meanReadDepth] => 30.41
                    [variantsCalled] => 5875529
                    [variantsFiltered] => 5585651
                    [snpCount] => 3897203
                    [snpHom] => 2133582
                    [snpHet] => 1763621
                    [indelCount] => 1696310
                    [insHom] => 358177
                    [delHom] => 494644
                    [insHet] => 392108
                    [delHet] => 478545
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817177
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817177/WI_37601-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242