Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721120
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 590
[wgsID] => 372
[fwdFile] => WI_37607_R1.fastq.gz
[fwdMd5] => 6c792b4b963c925b31dac1f32196a62e
[revFile] => WI_37607_R2.fastq.gz
[revMd5] => c55459af08e16ef20a26f9aba7341ae3
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632429
[enaRun] => ERR11203045
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 809
[wgsID] => 372
[refGenome] => cf4
[dateSubmitted] => 2023-06-13 12:28:00
[dateCompleted] => 2023-06-14 00:59:00
[bamMd5] => 117d6bcc262e2784c80699422d54d287
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 650946318
[primaryReads] =>
[mappedReads] => 650096022
[primaryMapped] =>
[pairedReads] => 630315136
[meanInsertSize] => 381.55
[meanReadDepth] => 32.03
[variantsCalled] => 6237620
[variantsFiltered] => 5922666
[snpCount] => 4147315
[snpHom] => 1900247
[snpHet] => 2247068
[indelCount] => 1785072
[insHom] => 312156
[delHom] => 436153
[insHet] => 481320
[delHet] => 591305
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21817178
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817178/WI_37607-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242