Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190110
[wgsExptID] => 19
[Batch] => Edinburgh_9
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2018-04-26
[FastqID] => 143
[wgsID] => 81
[fwdFile] => BoT_33129_R1.fastq.gz
[fwdMd5] => 5f25613de04c401d31873cf083c6cdb5
[revFile] => BoT_33129_R2.fastq.gz
[revMd5] => a3a52fed4e7b18b1cbcb631312a5f45b
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10648181
[enaRun] => ERR11223852
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 62
[wgsID] => 81
[refGenome] => cf4
[dateSubmitted] => 2022-02-11 11:11:00
[dateCompleted] => 2022-02-12 04:39:00
[bamMd5] => b308b1dfbc9f0fc7ef348ac93ce8c0aa
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1006526744
[primaryReads] =>
[mappedReads] => 906019208
[primaryMapped] =>
[pairedReads] => 883844044
[meanInsertSize] => 465.33
[meanReadDepth] => 33.22
[variantsCalled] => 6168460
[variantsFiltered] => 5826373
[snpCount] => 4046920
[snpHom] => 2055474
[snpHet] => 1991446
[indelCount] => 1789354
[insHom] => 324225
[delHom] => 451450
[insHet] => 471570
[delHet] => 577447
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21775556
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775556/BoT_33129-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242