Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721138
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 572
[wgsID] => 391
[fwdFile] => MS_31387_R1.fastq.gz
[fwdMd5] => ccac161bc4ae732a0938dbfd1f707215
[revFile] => MS_31387_R2.fastq.gz
[revMd5] => ca65f5183d4d6fb5b8392ae94bc1fa04
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632411
[enaRun] => ERR11203027
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 791
[wgsID] => 391
[refGenome] => cf4
[dateSubmitted] => 2023-05-16 16:26:00
[dateCompleted] => 2023-05-17 09:43:00
[bamMd5] => 255f3cf1f1c3b1c173fc98ad0e2df9c2
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 589633395
[primaryReads] =>
[mappedReads] => 588367310
[primaryMapped] =>
[pairedReads] => 569330712
[meanInsertSize] => 368.55
[meanReadDepth] => 28.14
[variantsCalled] => 5961260
[variantsFiltered] => 5664713
[snpCount] => 3961710
[snpHom] => 2164019
[snpHet] => 1797691
[indelCount] => 1711142
[insHom] => 363370
[delHom] => 498822
[insHet] => 393153
[delHet] => 483572
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817133
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817133/MS_31387-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242